Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10247904	1.00[ASN][1000 genomes]
rs11773233	1.00[ASN][1000 genomes]
rs12536063	1.00[ASN][1000 genomes]
rs12536083	0.84[CEU][hapmap]
rs12538303	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs1443754	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs17369598	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462732	1.00[ASN][1000 genomes]
rs56346012	1.00[ASN][1000 genomes]
rs62473066	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474590	1.00[ASN][1000 genomes]
rs62474591	1.00[ASN][1000 genomes]
rs6943903	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702419	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702420	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214169	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216104	1.00[ASN][1000 genomes]
rs7778318	1.00[ASN][1000 genomes]
rs7785641	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs7801104	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs7803157	1.00[ASN][1000 genomes]
rs798680	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs798682	0.94[CEU][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs798684	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs798685	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121977600	Weak transcription	Gastric	stomach
2	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
3	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:121958800-121994400	Weak transcription	Lung	lung
5	chr7:121961200-121980400	Weak transcription	Left Ventricle	heart
6	chr7:121962600-121993000	Weak transcription	Ovary	ovary
7	chr7:121963000-121968800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:121964600-121968400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:121965400-121968200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:121965400-121968800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:121965400-121969800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:121965800-121968000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:121965800-121968200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:121966000-121968000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:121966000-121968200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:121966000-121968400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:121966800-121968200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:121967400-121969000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:121967400-121971000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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