Variant report

Variant	rs10247904
Chromosome Location	chr7:121993483-121993484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11773233	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536063	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536083	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs12538303	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443754	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369598	1.00[ASN][1000 genomes]
rs17462732	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56346012	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62473066	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474590	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474591	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474592	0.82[EUR][1000 genomes]
rs6943903	1.00[ASN][1000 genomes]
rs702419	0.87[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702420	0.87[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214169	1.00[ASN][1000 genomes]
rs73216104	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778318	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785641	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794283	1.00[ASN][1000 genomes]
rs7801104	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803157	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804733	0.86[CEU][hapmap]
rs798680	0.86[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs798682	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs798684	0.87[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs798685	0.86[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:121958800-121994400	Weak transcription	Lung	lung
3	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
4	chr7:121984200-121997800	Weak transcription	Fetal Lung	lung
5	chr7:121984800-122002200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:121992200-121993800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:121992400-121993600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:121992400-121993800	Enhancers	HUES48 Cell Line	embryonic stem cell

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