Variant report

Variant	rs798682
Chromosome Location	chr7:121987158-121987159
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121984334..121987291-chr7:121991473..121993472,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10247904	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773233	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536063	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536083	0.90[CEU][hapmap]
rs12538303	0.90[CEU][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs1443754	0.90[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369598	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462732	0.84[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56346012	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62473066	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474590	1.00[ASN][1000 genomes]
rs62474591	1.00[ASN][1000 genomes]
rs6943903	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702419	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702420	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214169	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216104	1.00[ASN][1000 genomes]
rs7778318	0.85[CEU][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes]
rs7785641	0.90[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794283	0.94[CEU][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801104	0.90[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803157	0.85[CEU][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs7804733	0.81[CEU][hapmap]
rs798680	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs798684	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs798685	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
2	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:121958800-121994400	Weak transcription	Lung	lung
4	chr7:121962600-121993000	Weak transcription	Ovary	ovary
5	chr7:121974400-121987200	Weak transcription	Fetal Intestine Large	intestine
6	chr7:121980800-122018600	Weak transcription	Left Ventricle	heart
7	chr7:121984200-121997800	Weak transcription	Fetal Lung	lung
8	chr7:121984800-121989600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:121984800-121989800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:121984800-122002200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:121985000-121989600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:121985200-121989400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:121985200-121989800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:121985400-121989800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:121985600-121992200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:121985800-121989400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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