Variant report

Variant	rs9293562
Chromosome Location	chr5:90594834-90594835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90592976..90595970-chr5:90596272..90598046,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10057046	0.92[ASN][1000 genomes]
rs10462494	0.88[ASN][1000 genomes]
rs10462495	0.88[ASN][1000 genomes]
rs13356765	0.91[ASN][1000 genomes]
rs2048453	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2137007	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4916853	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4916854	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4916857	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6865066	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6865269	0.88[ASN][1000 genomes]
rs6877420	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6880312	0.88[ASN][1000 genomes]
rs7704529	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7721772	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7727557	0.88[ASN][1000 genomes]
rs7732832	0.91[ASN][1000 genomes]
rs9293564	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90589800-90607400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:90592800-90595400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr5:90592800-90595600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:90592800-90598200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:90593000-90596600	Weak transcription	Placenta	Placenta
6	chr5:90593000-90597200	Weak transcription	Adipose Nuclei	Adipose
7	chr5:90593000-90597800	Weak transcription	Brain Anterior Caudate	brain
8	chr5:90593000-90597800	Weak transcription	Right Atrium	heart
9	chr5:90593000-90598400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:90593000-90601200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:90593000-90602400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:90593000-90606400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:90593000-90607000	Weak transcription	Left Ventricle	heart
14	chr5:90593000-90607000	Weak transcription	HSMMtube	muscle
15	chr5:90593200-90597000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:90593200-90597200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:90593200-90597200	Weak transcription	A549	lung
18	chr5:90593200-90601800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr5:90593200-90601800	Weak transcription	HMEC	breast
20	chr5:90593400-90597000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:90593400-90597000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:90593400-90597200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:90593400-90597200	Weak transcription	Osteobl	bone
24	chr5:90593800-90596200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:90594000-90601200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:90594200-90597000	Weak transcription	Hela-S3	cervix
27	chr5:90594400-90597200	Weak transcription	NHDF-Ad	bronchial

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