Variant report

Variant	rs9293564
Chromosome Location	chr5:90607925-90607926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:90607284..90611861-chr5:90674569..90683045,11	K562	blood:
2	chr5:90575227..90576970-chr5:90607873..90610168,2	K562	blood:
3	chr5:90607483..90611926-chr5:90672625..90681906,20	MCF-7	breast:
4	chr5:90605667..90612137-chr5:90676262..90681561,13	K562	blood:
5	chr5:90574749..90579554-chr5:90606387..90610471,6	MCF-7	breast:
6	chr5:90607535..90610829-chr5:90673824..90679078,6	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARRDC3-1	chr5:90607463-90608312	XLOC_004924
2	lnc-ARRDC3-1	chr5:90601497-90608312	NONHSAT102743

No data

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction
ENSG00000234292	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10057046	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10462494	0.96[ASN][1000 genomes]
rs10462495	0.96[ASN][1000 genomes]
rs13356765	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2048453	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2137007	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916853	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4916854	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4916857	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6865066	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6865269	0.96[ASN][1000 genomes]
rs6877420	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6880312	0.96[ASN][1000 genomes]
rs7704529	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7721772	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7727557	0.96[ASN][1000 genomes]
rs7732832	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9293562	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90602600-90608000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:90605200-90609000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:90605400-90611200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr5:90605600-90610200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:90605800-90608400	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:90605800-90610400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr5:90605800-90610400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr5:90605800-90611200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:90606000-90611200	Enhancers	Fetal Thymus	thymus
10	chr5:90606400-90609400	Enhancers	Lung	lung
11	chr5:90606400-90610400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:90606400-90610800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:90606600-90608000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr5:90606600-90608200	Enhancers	Fetal Muscle Trunk	muscle
15	chr5:90606600-90608200	Enhancers	Placenta	Placenta
16	chr5:90606600-90609000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:90606600-90610400	Enhancers	Primary T cells from cord blood	blood
18	chr5:90606600-90610600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:90606600-90612200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:90606800-90608000	Enhancers	Primary hematopoietic stem cells	blood
21	chr5:90606800-90608200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:90606800-90608200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr5:90606800-90608600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:90606800-90609400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr5:90606800-90609800	Enhancers	NHLF	lung
26	chr5:90606800-90610200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr5:90606800-90610600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:90606800-90611400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:90607000-90608000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:90607000-90608000	Enhancers	Stomach Smooth Muscle	stomach
31	chr5:90607000-90608200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:90607000-90608200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:90607000-90608200	Enhancers	Left Ventricle	heart
34	chr5:90607000-90608200	Enhancers	Pancreas	Pancrea
35	chr5:90607000-90608200	Enhancers	Right Atrium	heart
36	chr5:90607000-90608200	Enhancers	Right Ventricle	heart
37	chr5:90607000-90608400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr5:90607000-90608400	Enhancers	Esophagus	oesophagus
39	chr5:90607000-90608800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr5:90607000-90609000	Enhancers	Brain Hippocampus Middle	brain
41	chr5:90607000-90609000	Transcr. at gene 5' and 3'	A549	lung
42	chr5:90607000-90609600	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr5:90607000-90609800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr5:90607000-90610200	Enhancers	Thymus	Thymus
45	chr5:90607000-90610400	Enhancers	Fetal Muscle Leg	muscle
46	chr5:90607000-90610600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr5:90607200-90608000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:90607200-90608000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr5:90607200-90608000	Flanking Active TSS	Fetal Lung	lung
50	chr5:90607200-90608000	Enhancers	Stomach Mucosa	stomach

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