Variant report

Variant	rs9296811
Chromosome Location	chr6:55786646-55786647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10456719	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485077	1.00[ASN][1000 genomes]
rs10485078	1.00[ASN][1000 genomes]
rs10948958	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948960	0.83[EUR][1000 genomes]
rs10948961	0.83[EUR][1000 genomes]
rs1156708	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190342	0.86[EUR][1000 genomes]
rs12193200	0.86[EUR][1000 genomes]
rs12193262	1.00[ASN][1000 genomes]
rs12193956	1.00[ASN][1000 genomes]
rs12194691	1.00[ASN][1000 genomes]
rs12195034	1.00[ASN][1000 genomes]
rs12196632	1.00[ASN][1000 genomes]
rs12198673	1.00[ASN][1000 genomes]
rs12200110	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200716	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201469	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201907	0.86[EUR][1000 genomes]
rs12202221	1.00[ASN][1000 genomes]
rs12207141	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207650	1.00[ASN][1000 genomes]
rs12208960	0.86[EUR][1000 genomes]
rs12209452	1.00[ASN][1000 genomes]
rs12209568	0.86[EUR][1000 genomes]
rs12211675	0.86[EUR][1000 genomes]
rs12211939	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214985	1.00[ASN][1000 genomes]
rs12215085	0.86[EUR][1000 genomes]
rs12216252	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374653	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023580	1.00[ASN][1000 genomes]
rs2843544	1.00[ASN][1000 genomes]
rs28452747	1.00[ASN][1000 genomes]
rs2894828	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326238	1.00[ASN][1000 genomes]
rs60746236	0.86[EUR][1000 genomes]
rs62411454	1.00[ASN][1000 genomes]
rs62412798	1.00[ASN][1000 genomes]
rs62412802	1.00[ASN][1000 genomes]
rs6931132	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714069	0.83[EUR][1000 genomes]
rs7751644	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770267	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296805	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464315	0.83[EUR][1000 genomes]
rs9475495	0.82[EUR][1000 genomes]
rs9475497	0.82[EUR][1000 genomes]
rs9475498	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv5312	chr6:55784991-55830051	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55783400-55789800	Weak transcription	NHEK	skin
2	chr6:55784200-55789600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:55784600-55789800	Weak transcription	Hela-S3	cervix
4	chr6:55784800-55789800	Weak transcription	HMEC	breast
5	chr6:55785000-55789000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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