Variant report

Variant	rs12211675
Chromosome Location	chr6:55808538-55808539
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr6:55808242-55809020	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
NPM1P36	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1002250	0.86[EUR][1000 genomes]
rs1005783	0.82[EUR][1000 genomes]
rs10456725	0.82[EUR][1000 genomes]
rs10948960	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10948961	0.96[EUR][1000 genomes]
rs10948964	0.86[EUR][1000 genomes]
rs10948965	0.86[EUR][1000 genomes]
rs10948966	0.83[EUR][1000 genomes]
rs10948967	0.86[EUR][1000 genomes]
rs10948968	0.86[EUR][1000 genomes]
rs12190342	1.00[EUR][1000 genomes]
rs12193200	1.00[EUR][1000 genomes]
rs12198766	0.86[EUR][1000 genomes]
rs12201907	1.00[EUR][1000 genomes]
rs12204670	0.86[EUR][1000 genomes]
rs12204682	0.86[EUR][1000 genomes]
rs12205967	0.86[EUR][1000 genomes]
rs12208960	1.00[EUR][1000 genomes]
rs12209568	1.00[EUR][1000 genomes]
rs12211939	0.88[EUR][1000 genomes]
rs12212033	0.86[EUR][1000 genomes]
rs12215085	1.00[EUR][1000 genomes]
rs12216413	0.81[EUR][1000 genomes]
rs16869623	0.86[EUR][1000 genomes]
rs17677530	1.00[CHB][hapmap]
rs2143518	0.86[EUR][1000 genomes]
rs3798837	1.00[CHB][hapmap]
rs3950156	0.86[EUR][1000 genomes]
rs60746236	1.00[EUR][1000 genomes]
rs62406117	0.81[EUR][1000 genomes]
rs62406121	0.81[EUR][1000 genomes]
rs62406123	0.81[EUR][1000 genomes]
rs714069	0.96[EUR][1000 genomes]
rs73442183	0.94[ASN][1000 genomes]
rs7739760	0.81[EUR][1000 genomes]
rs7755390	0.81[EUR][1000 genomes]
rs9296811	0.86[EUR][1000 genomes]
rs9296819	0.86[EUR][1000 genomes]
rs9296820	0.82[EUR][1000 genomes]
rs9296821	0.82[EUR][1000 genomes]
rs9370478	0.81[EUR][1000 genomes]
rs9464315	0.96[EUR][1000 genomes]
rs9464327	0.86[EUR][1000 genomes]
rs9464334	0.81[EUR][1000 genomes]
rs9475495	0.94[EUR][1000 genomes]
rs9475497	0.94[EUR][1000 genomes]
rs9475498	0.96[EUR][1000 genomes]
rs9475510	0.86[EUR][1000 genomes]
rs9475512	0.86[EUR][1000 genomes]
rs9475513	0.84[EUR][1000 genomes]
rs9475514	0.86[EUR][1000 genomes]
rs9475515	0.86[EUR][1000 genomes]
rs9475516	0.86[EUR][1000 genomes]
rs9475517	0.86[EUR][1000 genomes]
rs9475530	0.82[EUR][1000 genomes]
rs9475550	0.81[EUR][1000 genomes]
rs980917	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv5312	chr6:55784991-55830051	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55807000-55809600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:55807800-55809000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:55807800-55809000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:55807800-55809000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:55808000-55808800	Enhancers	NHLF	lung
6	chr6:55808000-55808800	Enhancers	Osteobl	bone

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