Variant report

Variant	rs9296834
Chromosome Location	chr6:56112213-56112214
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10223442	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62411895	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6903416	1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs6925652	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56109400-56113000	Active TSS	Aorta	Aorta
2	chr6:56110400-56112800	Active TSS	Fetal Kidney	kidney
3	chr6:56110800-56112400	Active TSS	Fetal Lung	lung
4	chr6:56111000-56112600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:56111200-56112600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:56111200-56112600	Active TSS	H1 Cell Line	embryonic stem cell
7	chr6:56111200-56112600	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr6:56111200-56112600	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:56111200-56112600	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:56111200-56112600	Active TSS	Rectal Smooth Muscle	rectum
11	chr6:56111400-56112400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:56111400-56112400	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:56111400-56112600	Active TSS	H9 Cell Line	embryonic stem cell
14	chr6:56111400-56112600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:56111400-56112800	Active TSS	Brain Angular Gyrus	brain
16	chr6:56111400-56112800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
17	chr6:56111400-56112800	Active TSS	Brain Substantia Nigra	brain
18	chr6:56111400-56112800	Active TSS	Colon Smooth Muscle	Colon
19	chr6:56111400-56112800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
20	chr6:56111400-56112800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr6:56111400-56112800	Active TSS	NHLF	lung
22	chr6:56111400-56113000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:56111400-56113000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:56111400-56113000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:56111600-56112600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:56111600-56112600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:56111600-56112600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:56111600-56112600	Active TSS	Ovary	ovary
29	chr6:56111600-56112600	Active TSS	Right Ventricle	heart
30	chr6:56111600-56112600	Active TSS	Stomach Smooth Muscle	stomach
31	chr6:56111600-56112600	Active TSS	A549	lung
32	chr6:56111600-56112800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:56111600-56112800	Active TSS	Brain Anterior Caudate	brain
34	chr6:56111600-56112800	Active TSS	Left Ventricle	heart
35	chr6:56111600-56112800	Flanking Active TSS	NHEK	skin
36	chr6:56111600-56113000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:56111600-56113000	Flanking Active TSS	Osteobl	bone
38	chr6:56111800-56112400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
39	chr6:56111800-56112400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:56111800-56112400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
41	chr6:56111800-56112600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
42	chr6:56111800-56112600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:56111800-56112600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:56111800-56112600	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr6:56111800-56112600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
46	chr6:56111800-56112600	Active TSS	Fetal Heart	heart
47	chr6:56111800-56112600	Flanking Bivalent TSS/Enh	Placenta	Placenta
48	chr6:56111800-56112600	Bivalent/Poised TSS	Fetal Stomach	stomach
49	chr6:56111800-56112600	Active TSS	Psoas Muscle	Psoas
50	chr6:56111800-56112600	Active TSS	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links