Variant report

Variant	rs9296968
Chromosome Location	chr6:15130064-15130065
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13213110	0.84[AMR][1000 genomes]
rs2327880	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35325520	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4003	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715968	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4715969	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6928595	0.95[JPT][hapmap]
rs7454134	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7741059	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7758048	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9296969	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9367863	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9476746	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9296968	GFOD1	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15116400-15132000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15128600-15130200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:15129600-15131000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:15129800-15130800	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:15130000-15130200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:15130000-15130400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:15130000-15130400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:15130000-15130400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:15130000-15130400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:15130000-15130400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:15130000-15130400	Enhancers	Esophagus	oesophagus
12	chr6:15130000-15130600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:15130000-15130600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:15130000-15130600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:15130000-15130600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:15130000-15130600	Enhancers	Fetal Kidney	kidney
17	chr6:15130000-15130600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:15130000-15130800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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