Variant report

Variant	rs9296969
Chromosome Location	chr6:15130292-15130293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15130172..15131963-chr6:15134360..15137201,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2327880	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35325520	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4003	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715968	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4715969	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6459395	0.80[EUR][1000 genomes]
rs6459399	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67484865	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7454134	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7741059	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7758048	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296968	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9367863	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9476746	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15116400-15132000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15129600-15131000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15129800-15130800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:15130000-15130400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:15130000-15130400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:15130000-15130400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:15130000-15130400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:15130000-15130400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:15130000-15130400	Enhancers	Esophagus	oesophagus
10	chr6:15130000-15130600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:15130000-15130600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:15130000-15130600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:15130000-15130600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:15130000-15130600	Enhancers	Fetal Kidney	kidney
15	chr6:15130000-15130600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:15130000-15130800	Enhancers	GM12878-XiMat	blood
17	chr6:15130200-15130400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:15130200-15130400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:15130200-15130400	Enhancers	Fetal Stomach	stomach
20	chr6:15130200-15130600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:15130200-15130600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:15130200-15130600	Enhancers	K562	blood
23	chr6:15130200-15130800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr6:15130200-15132000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:15130200-15136400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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