Variant report

Variant	rs9298085
Chromosome Location	chr8:65500797-65500798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10081461	0.80[CEU][hapmap]
rs10092618	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs10105184	0.80[CEU][hapmap];0.84[YRI][hapmap]
rs10808738	0.80[CEU][hapmap];0.84[YRI][hapmap]
rs11986615	0.80[CEU][hapmap];0.84[YRI][hapmap]
rs11998077	0.80[CEU][hapmap]
rs28679790	0.84[EUR][1000 genomes]
rs3779870	0.96[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs3779874	0.83[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap]
rs4236934	0.91[CEU][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs4327886	0.91[CEU][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs4395923	0.80[CEU][hapmap];0.84[YRI][hapmap]
rs4406437	0.80[CEU][hapmap]
rs4452822	0.80[CEU][hapmap];0.84[YRI][hapmap]
rs4465006	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4467968	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4486246	0.96[CEU][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs4507804	0.84[YRI][hapmap]
rs4581093	0.80[CEU][hapmap];0.84[YRI][hapmap]
rs6999999	0.80[CEU][hapmap];0.84[YRI][hapmap]
rs7004685	0.91[CEU][hapmap]
rs7005708	0.91[CEU][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs7817744	0.96[CEU][hapmap];0.86[TSI][hapmap]
rs8192899	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8192906	0.96[CEU][hapmap];0.91[JPT][hapmap]
rs9298087	0.80[CEU][hapmap];0.84[YRI][hapmap]
rs9298088	0.80[CEU][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9298085	CYP7B1	cis	parietal	SCAN
rs9298085	CYP7B1	cis	cerebellum	SCAN
rs9298085	CHD7	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65500600-65526800	Weak transcription	Placenta Amnion	Placenta Amnion

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