Variant report

Variant	rs9301431
Chromosome Location	chr13:110791371-110791372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110790546..110793559-chr13:110794348..110799306,5	MCF-7	breast:
2	chr13:110781644..110784725-chr13:110789802..110792162,3	MCF-7	breast:
3	chr13:110791009..110793227-chr13:110794639..110796832,2	MCF-7	breast:
4	chr13:110790128..110791725-chr13:110793151..110794928,2	K562	blood:
5	chr1:233748905..233749664-chr13:110790871..110791779,2	Hela-S3	cervix:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7325330	1.00[EUR][1000 genomes]
rs7998488	1.00[EUR][1000 genomes]
rs9301433	1.00[EUR][1000 genomes]
rs9588101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588105	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110789200-110791600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr13:110789400-110791400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:110789400-110791600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr13:110789600-110791400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:110789600-110791400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr13:110789600-110791400	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr13:110789600-110791400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:110789600-110791400	Flanking Bivalent TSS/Enh	Dnd41	blood
9	chr13:110790000-110791400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:110790000-110791400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:110790000-110791400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr13:110790000-110791400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr13:110790000-110791400	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr13:110790000-110791400	Active TSS	NHLF	lung
15	chr13:110790200-110791400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr13:110790200-110791400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:110790200-110791400	Active TSS	Brain Angular Gyrus	brain
18	chr13:110790200-110791400	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr13:110790200-110791400	Active TSS	Stomach Mucosa	stomach
20	chr13:110790400-110791400	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr13:110790400-110791400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:110790400-110791400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr13:110790400-110791400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:110790400-110791400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr13:110790400-110791400	Active TSS	Brain Hippocampus Middle	brain
26	chr13:110790400-110791400	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr13:110790600-110791400	Active TSS	Primary B cells from cord blood	blood
28	chr13:110790600-110798400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:110790800-110791400	Enhancers	Fetal Heart	heart
30	chr13:110791000-110791400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
31	chr13:110791000-110791400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr13:110791000-110791400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
33	chr13:110791000-110791400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
34	chr13:110791000-110791400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr13:110791000-110791400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr13:110791000-110791400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr13:110791000-110791400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr13:110791000-110791400	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr13:110791000-110791400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
40	chr13:110791000-110791400	Flanking Active TSS	Placenta	Placenta
41	chr13:110791000-110791400	Flanking Active TSS	Fetal Thymus	thymus
42	chr13:110791000-110791400	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr13:110791000-110791400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr13:110791000-110791400	Flanking Active TSS	Hela-S3	cervix
45	chr13:110791000-110791400	Flanking Active TSS	HMEC	breast
46	chr13:110791000-110791400	Flanking Active TSS	HUVEC	blood vessel
47	chr13:110791000-110791400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr13:110791000-110791400	Flanking Active TSS	NH-A	brain
49	chr13:110791000-110791400	Flanking Active TSS	NHEK	skin
50	chr13:110791000-110791400	Flanking Active TSS	Osteobl	bone

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