Variant report

Variant	rs9588105
Chromosome Location	chr13:110811286-110811287
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7325330	1.00[EUR][1000 genomes]
rs7998488	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9301431	1.00[EUR][1000 genomes]
rs9301433	1.00[EUR][1000 genomes]
rs9588101	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv901007	chr13:110793123-110813709	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110791200-110811600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr13:110791200-110811800	Weak transcription	Right Atrium	heart
3	chr13:110791200-110825600	Weak transcription	Esophagus	oesophagus
4	chr13:110791400-110812800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:110791400-110813400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:110791400-110820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:110791400-110825800	Weak transcription	A549	lung
8	chr13:110791400-110868400	Weak transcription	Psoas Muscle	Psoas
9	chr13:110795800-110826000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:110798400-110825400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:110798800-110825600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:110798800-110853200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:110799000-110821200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr13:110799600-110840200	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr13:110799800-110811600	Strong transcription	Left Ventricle	heart
16	chr13:110800000-110824800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:110800000-110825800	Strong transcription	Ovary	ovary
18	chr13:110800200-110837800	Strong transcription	NH-A	brain
19	chr13:110800600-110834200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr13:110800800-110821800	Strong transcription	Placenta	Placenta
21	chr13:110801000-110818400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr13:110801000-110822600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr13:110802400-110822000	Strong transcription	Colon Smooth Muscle	Colon
24	chr13:110802400-110842800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr13:110803000-110822000	Weak transcription	Small Intestine	intestine
26	chr13:110803000-110834200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr13:110803000-110840400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:110803200-110811600	Strong transcription	HSMM	muscle
29	chr13:110803200-110815800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr13:110803200-110826000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:110803200-110839800	Weak transcription	NHDF-Ad	bronchial
32	chr13:110803200-110839800	Strong transcription	Osteobl	bone
33	chr13:110803600-110840000	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr13:110804000-110813200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr13:110804000-110825800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr13:110804400-110811800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr13:110804400-110812000	Strong transcription	HSMMtube	muscle
38	chr13:110804800-110812600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr13:110804800-110825200	Weak transcription	Brain Anterior Caudate	brain
40	chr13:110805000-110811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr13:110805200-110814400	Weak transcription	Gastric	stomach
42	chr13:110806200-110824000	Weak transcription	Liver	Liver
43	chr13:110806600-110811400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr13:110806600-110860400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr13:110807600-110812000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr13:110807800-110812000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr13:110807800-110812200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr13:110807800-110812200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr13:110807800-110813200	Weak transcription	Spleen	Spleen
50	chr13:110807800-110814400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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