Variant report

Variant	rs9301464
Chromosome Location	chr13:111211020-111211021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:111210521..111211181-chr19:7702203..7702830,2	Hela-S3	cervix:
2	chr13:111205147..111211458-chr13:111212289..111216967,11	MCF-7	breast:
3	chr13:111209486..111211441-chr13:111366105..111367683,2	K562	blood:
4	chr13:111158150..111162393-chr13:111210141..111213644,4	K562	blood:

Variant related genes	Relation type
ENSG00000134871	Chromatin interaction
ENSG00000232814	Chromatin interaction
ENSG00000153487	Chromatin interaction
ENSG00000139832	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9588193	1.00[AMR][1000 genomes]
rs9805796	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv832720	chr13:111100235-111295993	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1046291	chr13:111125747-111257861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1045143	chr13:111126822-111242791	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1044234	chr13:111143053-111370580	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
6	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
7	nsv901010	chr13:111165390-111286592	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1053922	chr13:111167764-111330876	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv1043849	chr13:111167764-111340418	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv541924	chr13:111167764-111340418	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv1036160	chr13:111167764-111347308	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv541925	chr13:111167764-111347308	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv901011	chr13:111168951-111280002	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111184000-111211800	Weak transcription	HMEC	breast
2	chr13:111191200-111213000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:111192200-111212000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:111194400-111212000	Weak transcription	K562	blood
5	chr13:111195400-111211400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr13:111197200-111211800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr13:111199800-111211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:111199800-111212000	Weak transcription	Esophagus	oesophagus
9	chr13:111200200-111211800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr13:111200200-111212000	Weak transcription	Hela-S3	cervix
11	chr13:111201400-111212000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr13:111204000-111211800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:111204000-111211800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr13:111204200-111212000	Weak transcription	Fetal Kidney	kidney
15	chr13:111204400-111211400	Weak transcription	Fetal Lung	lung
16	chr13:111204400-111211400	Weak transcription	Ovary	ovary
17	chr13:111205600-111211600	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:111205600-111211800	Weak transcription	Psoas Muscle	Psoas
19	chr13:111206600-111211800	Enhancers	Stomach Mucosa	stomach
20	chr13:111206800-111211800	Genic enhancers	Fetal Intestine Small	intestine
21	chr13:111207000-111211600	Weak transcription	Fetal Heart	heart
22	chr13:111207200-111211800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr13:111208400-111212000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:111208600-111211600	Weak transcription	Right Atrium	heart
25	chr13:111208600-111213200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr13:111208800-111211600	Weak transcription	Primary B cells from cord blood	blood
27	chr13:111208800-111212000	Weak transcription	Small Intestine	intestine
28	chr13:111208800-111212200	Weak transcription	GM12878-XiMat	blood
29	chr13:111208800-111213000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr13:111209200-111211600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr13:111209400-111211200	ZNF genes & repeats	Fetal Stomach	stomach
32	chr13:111209400-111211800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr13:111209600-111211400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:111209800-111211400	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:111209800-111211800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr13:111210000-111211200	Enhancers	Adipose Nuclei	Adipose
37	chr13:111210000-111211400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr13:111210000-111211400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr13:111210000-111211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr13:111210000-111211600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr13:111210000-111212000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr13:111210200-111211400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr13:111210200-111211400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr13:111210200-111211600	Enhancers	HepG2	liver
45	chr13:111210400-111211400	Weak transcription	Aorta	Aorta
46	chr13:111210400-111211400	Enhancers	Duodenum Mucosa	Duodenum
47	chr13:111210400-111211800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr13:111210600-111211200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr13:111210600-111211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:111210600-111211400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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