Variant report

Variant	rs9301718
Chromosome Location	chr13:91874975-91874976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:91870683..91872807-chr13:91874393..91875908,2	K562	blood:
2	chr13:91870103..91873591-chr13:91874393..91876437,4	K562	blood:
3	chr13:91865105..91867880-chr13:91873303..91875140,2	K562	blood:
4	chr13:91874317..91877708-chr13:92010260..92012794,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10454517	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11839269	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs1330067	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332214	1.00[EUR][1000 genomes]
rs1332221	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1332222	1.00[ASN][1000 genomes]
rs1332223	1.00[EUR][1000 genomes]
rs1332224	1.00[EUR][1000 genomes]
rs16945476	1.00[MEX][hapmap]
rs16945551	1.00[EUR][1000 genomes]
rs16945563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945595	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs6492531	1.00[EUR][1000 genomes]
rs6492532	1.00[EUR][1000 genomes]
rs7318410	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7324724	1.00[EUR][1000 genomes]
rs7325457	1.00[EUR][1000 genomes]
rs7328566	1.00[EUR][1000 genomes]
rs7328753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328963	1.00[EUR][1000 genomes]
rs7332514	1.00[EUR][1000 genomes]
rs7332740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7332819	1.00[EUR][1000 genomes]
rs7333912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336155	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7338957	1.00[EUR][1000 genomes]
rs7358978	1.00[EUR][1000 genomes]
rs7993938	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001570	1.00[EUR][1000 genomes]
rs9301714	1.00[EUR][1000 genomes]
rs9301715	1.00[EUR][1000 genomes]
rs9583900	1.00[EUR][1000 genomes]
rs9589135	1.00[EUR][1000 genomes]
rs9589139	1.00[EUR][1000 genomes]
rs9589143	1.00[EUR][1000 genomes]
rs9589144	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9589145	1.00[EUR][1000 genomes]
rs9589147	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9589150	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9589153	1.00[EUR][1000 genomes]
rs987770	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs988411	1.00[EUR][1000 genomes]
rs988412	1.00[EUR][1000 genomes]
rs990484	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
4	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
5	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
6	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
7	nsv832678	chr13:91771619-91932241	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2756325	chr13:91836410-91890606	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2756433	chr13:91841599-91968099	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv832679	chr13:91859467-92030220	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1943 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9301718	PTGS1	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91873600-91876200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:91874000-91878200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:91874600-91890600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:91874800-91875000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:91874800-91875000	Enhancers	HUES48 Cell Line	embryonic stem cell

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