Variant report

Variant	rs9301886
Chromosome Location	chr13:94151923-94151924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:94151315..94153018-chr13:94160965..94162525,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-15	chr13:94151520-94153117	NONHSAT034712

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12184868	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1445267	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1584145	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1584146	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1584147	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1900048	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1900049	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2166240	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2166241	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2166242	0.96[ASN][1000 genomes]
rs2389006	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2590509	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590510	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590514	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590515	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590517	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2813591	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2813593	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2813597	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2892658	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3858838	0.94[ASN][1000 genomes]
rs3858839	0.97[ASN][1000 genomes]
rs4303337	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4390456	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4439616	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4479094	0.97[ASN][1000 genomes]
rs4491363	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4548730	0.97[ASN][1000 genomes]
rs6492665	0.89[ASN][1000 genomes]
rs7139968	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7316980	0.97[ASN][1000 genomes]
rs7322845	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7332793	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7337099	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7337720	0.87[ASN][1000 genomes]
rs7998884	0.89[ASN][1000 genomes]
rs8001786	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9301896	0.97[ASN][1000 genomes]
rs9516247	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv562749	chr13:94083352-94263206	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900920	chr13:94088707-94151937	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv1842896	chr13:94095160-94153194	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv900921	chr13:94105666-94157481	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv900922	chr13:94105666-94281492	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94149400-94152200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:94149600-94152000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:94149600-94152200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:94149600-94152200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:94149800-94154400	Weak transcription	Fetal Brain Female	brain
6	chr13:94150000-94152000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:94150000-94157800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:94150200-94152200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr13:94150200-94152200	Weak transcription	Fetal Heart	heart
10	chr13:94150400-94152000	Weak transcription	Fetal Brain Male	brain
11	chr13:94151600-94152000	Enhancers	Brain Angular Gyrus	brain
12	chr13:94151600-94152200	Enhancers	Ovary	ovary
13	chr13:94151600-94152400	Enhancers	Fetal Stomach	stomach
14	chr13:94151600-94152600	Enhancers	Fetal Lung	lung
15	chr13:94151600-94153200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr13:94151800-94152200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr13:94151800-94152400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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