Variant report

Variant	rs9303131
Chromosome Location	chr17:15616703-15616704
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62071728	0.84[AMR][1000 genomes]
rs9905520	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
4	nsv520426	chr17:15554561-15647723	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv907705	chr17:15611495-15717546	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9303131	ZNF286A	Cis_1M	lymphoblastoid	RTeQTL
rs9303131	ZNF286A	cis	multi-tissue	Pritchard

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15603600-15619200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:15604200-15623800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:15604400-15623800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr17:15604800-15623400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr17:15607000-15623400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr17:15608200-15621200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:15608400-15623800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr17:15608400-15623800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr17:15608600-15618200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr17:15610400-15619000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:15612000-15617000	Weak transcription	Right Ventricle	heart
12	chr17:15612000-15621200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr17:15612200-15617200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:15612200-15618800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:15612200-15619200	Weak transcription	Psoas Muscle	Psoas
16	chr17:15612400-15617000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr17:15612400-15617600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr17:15612400-15617800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr17:15612400-15617800	Weak transcription	HUVEC	blood vessel
20	chr17:15612400-15618600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr17:15612400-15618800	Weak transcription	Colon Smooth Muscle	Colon
22	chr17:15612400-15618800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr17:15612400-15619000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr17:15612400-15619000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr17:15612400-15619000	Weak transcription	Brain Angular Gyrus	brain
26	chr17:15612400-15619000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr17:15612400-15619200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr17:15612400-15620200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr17:15612400-15620400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr17:15612400-15620400	Weak transcription	Fetal Brain Male	brain
31	chr17:15612400-15620600	Weak transcription	Placenta	Placenta
32	chr17:15612600-15619000	Weak transcription	HSMM	muscle
33	chr17:15613600-15617600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
34	chr17:15614000-15617400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr17:15614000-15617400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr17:15614000-15617600	Strong transcription	Osteobl	bone
37	chr17:15614200-15616800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr17:15614200-15623600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
39	chr17:15614600-15617600	ZNF genes & repeats	A549	lung
40	chr17:15614600-15621200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr17:15614600-15623400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr17:15614600-15623400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr17:15614800-15617400	ZNF genes & repeats	HSMMtube	muscle
44	chr17:15614800-15617600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
45	chr17:15614800-15618000	Strong transcription	Ovary	ovary
46	chr17:15614800-15618200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr17:15614800-15621000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr17:15614800-15623400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
49	chr17:15615000-15619400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr17:15615000-15620000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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