Variant report

Variant	rs9305732
Chromosome Location	chr21:17166819-17166820
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17165873..17167703-chr21:17229304..17232137,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28542431	1.00[AMR][1000 genomes]
rs459495	0.90[AFR][1000 genomes]
rs73355413	1.00[AMR][1000 genomes]
rs73355433	1.00[AMR][1000 genomes]
rs7364033	0.80[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs995121	1.00[YRI][hapmap]
rs9974370	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9974439	1.00[AMR][1000 genomes]
rs9975190	0.87[AFR][1000 genomes]
rs9975412	0.81[AFR][1000 genomes]
rs9975855	1.00[YRI][hapmap]
rs9977019	1.00[YRI][hapmap]
rs9977583	0.82[AFR][1000 genomes]
rs9978395	0.82[MKK][hapmap]
rs9980755	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9981661	1.00[AMR][1000 genomes]
rs9981989	1.00[AMR][1000 genomes]
rs9983023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9984675	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9984939	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815433	chr21:17106192-17167353	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1063035	chr21:17154222-17224344	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17151800-17191000	Weak transcription	NH-A	brain
2	chr21:17155000-17171000	Weak transcription	Dnd41	blood
3	chr21:17155000-17179800	Weak transcription	Spleen	Spleen
4	chr21:17155000-17187400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr21:17155000-17188600	Weak transcription	HepG2	liver
6	chr21:17155200-17167600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr21:17155200-17168200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr21:17155200-17168600	Weak transcription	K562	blood
9	chr21:17155200-17169800	Weak transcription	Liver	Liver
10	chr21:17155200-17169800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr21:17155200-17177000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr21:17155200-17177000	Weak transcription	Brain Anterior Caudate	brain
13	chr21:17155200-17177000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr21:17155200-17177000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr21:17155200-17179200	Weak transcription	Fetal Intestine Large	intestine
16	chr21:17155200-17179200	Weak transcription	Left Ventricle	heart
17	chr21:17155200-17181200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr21:17155200-17181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr21:17155200-17181400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr21:17155200-17182200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr21:17155200-17183200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr21:17155200-17183200	Weak transcription	Placenta	Placenta
23	chr21:17155200-17184600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr21:17155200-17186200	Weak transcription	Fetal Thymus	thymus
25	chr21:17155200-17187200	Weak transcription	Thymus	Thymus
26	chr21:17155200-17187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr21:17155200-17187800	Weak transcription	Fetal Kidney	kidney
28	chr21:17155200-17189800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr21:17155200-17197600	Weak transcription	Fetal Heart	heart
30	chr21:17155200-17199200	Weak transcription	Right Ventricle	heart
31	chr21:17155200-17203800	Weak transcription	Colon Smooth Muscle	Colon
32	chr21:17155200-17209800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr21:17155200-17252800	Weak transcription	Fetal Brain Male	brain
34	chr21:17155400-17169000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr21:17155600-17176800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr21:17155600-17179200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr21:17155600-17182000	Weak transcription	Fetal Lung	lung
38	chr21:17155800-17167800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr21:17155800-17167800	Weak transcription	GM12878-XiMat	blood
40	chr21:17155800-17169400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr21:17155800-17176800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr21:17155800-17177200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr21:17155800-17185400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr21:17155800-17186200	Weak transcription	Fetal Muscle Leg	muscle
45	chr21:17155800-17187200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr21:17156000-17167400	Weak transcription	Primary B cells from cord blood	blood
47	chr21:17156000-17176200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr21:17156800-17168000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr21:17157000-17167200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr21:17157000-17178400	Weak transcription	Primary T cells fromperipheralblood	blood

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