Variant report

Variant	rs9984675
Chromosome Location	chr21:17157767-17157768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10482874	1.00[EUR][1000 genomes]
rs11911651	1.00[EUR][1000 genomes]
rs1474736	1.00[EUR][1000 genomes]
rs16988288	1.00[EUR][1000 genomes]
rs2225401	1.00[EUR][1000 genomes]
rs2823401	1.00[EUR][1000 genomes]
rs2823409	1.00[EUR][1000 genomes]
rs2823410	1.00[EUR][1000 genomes]
rs2823437	1.00[EUR][1000 genomes]
rs2823439	1.00[EUR][1000 genomes]
rs2823442	1.00[EUR][1000 genomes]
rs2823448	1.00[EUR][1000 genomes]
rs2823450	1.00[EUR][1000 genomes]
rs28372331	1.00[EUR][1000 genomes]
rs28465005	1.00[EUR][1000 genomes]
rs28510398	1.00[EUR][1000 genomes]
rs28542389	1.00[EUR][1000 genomes]
rs28542431	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627638	1.00[EUR][1000 genomes]
rs459495	0.95[AFR][1000 genomes]
rs57348380	1.00[EUR][1000 genomes]
rs58963354	1.00[EUR][1000 genomes]
rs61348938	1.00[EUR][1000 genomes]
rs6517555	1.00[EUR][1000 genomes]
rs7281995	1.00[EUR][1000 genomes]
rs7282463	1.00[EUR][1000 genomes]
rs73355413	1.00[AMR][1000 genomes]
rs73355433	1.00[AMR][1000 genomes]
rs73355441	1.00[EUR][1000 genomes]
rs73360907	1.00[EUR][1000 genomes]
rs73360910	1.00[EUR][1000 genomes]
rs73360912	1.00[EUR][1000 genomes]
rs73360916	1.00[EUR][1000 genomes]
rs7364033	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7510266	1.00[EUR][1000 genomes]
rs8126822	1.00[EUR][1000 genomes]
rs8127197	1.00[EUR][1000 genomes]
rs8129950	1.00[EUR][1000 genomes]
rs8130259	1.00[EUR][1000 genomes]
rs8131104	1.00[EUR][1000 genomes]
rs9305732	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs995121	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9974370	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9974439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9974570	1.00[EUR][1000 genomes]
rs9975855	0.88[YRI][hapmap]
rs9977019	0.89[YRI][hapmap]
rs9977583	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9977671	1.00[EUR][1000 genomes]
rs9978819	1.00[EUR][1000 genomes]
rs9979887	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9980143	1.00[EUR][1000 genomes]
rs9980755	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9981034	1.00[EUR][1000 genomes]
rs9981661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9981989	1.00[AMR][1000 genomes]
rs9982635	1.00[EUR][1000 genomes]
rs9983023	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9983852	1.00[EUR][1000 genomes]
rs9983961	1.00[EUR][1000 genomes]
rs9984939	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815433	chr21:17106192-17167353	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1063035	chr21:17154222-17224344	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17145800-17166600	Weak transcription	Psoas Muscle	Psoas
2	chr21:17148000-17160200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr21:17151600-17160600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr21:17151800-17191000	Weak transcription	NH-A	brain
5	chr21:17154800-17159600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr21:17154800-17161000	Weak transcription	Stomach Mucosa	stomach
7	chr21:17155000-17158800	Weak transcription	Colonic Mucosa	Colon
8	chr21:17155000-17160400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr21:17155000-17161200	Weak transcription	Gastric	stomach
10	chr21:17155000-17161200	Weak transcription	HMEC	breast
11	chr21:17155000-17165200	Weak transcription	Brain Hippocampus Middle	brain
12	chr21:17155000-17166600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr21:17155000-17166800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr21:17155000-17171000	Weak transcription	Dnd41	blood
15	chr21:17155000-17179800	Weak transcription	Spleen	Spleen
16	chr21:17155000-17187400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr21:17155000-17188600	Weak transcription	HepG2	liver
18	chr21:17155200-17158000	Weak transcription	Ovary	ovary
19	chr21:17155200-17158000	Weak transcription	Pancreas	Pancrea
20	chr21:17155200-17159400	Weak transcription	HUVEC	blood vessel
21	chr21:17155200-17160400	Weak transcription	Aorta	Aorta
22	chr21:17155200-17160600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr21:17155200-17160600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr21:17155200-17160600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr21:17155200-17160800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr21:17155200-17160800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr21:17155200-17160800	Weak transcription	Hela-S3	cervix
28	chr21:17155200-17160800	Weak transcription	NHDF-Ad	bronchial
29	chr21:17155200-17161000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr21:17155200-17161000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr21:17155200-17161000	Weak transcription	NHLF	lung
32	chr21:17155200-17161200	Weak transcription	Adipose Nuclei	Adipose
33	chr21:17155200-17161200	Weak transcription	Osteobl	bone
34	chr21:17155200-17162400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr21:17155200-17163600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr21:17155200-17166000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr21:17155200-17166600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr21:17155200-17167600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr21:17155200-17168200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr21:17155200-17168600	Weak transcription	K562	blood
41	chr21:17155200-17169800	Weak transcription	Liver	Liver
42	chr21:17155200-17169800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr21:17155200-17177000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr21:17155200-17177000	Weak transcription	Brain Anterior Caudate	brain
45	chr21:17155200-17177000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr21:17155200-17177000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr21:17155200-17179200	Weak transcription	Fetal Intestine Large	intestine
48	chr21:17155200-17179200	Weak transcription	Left Ventricle	heart
49	chr21:17155200-17181200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr21:17155200-17181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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