Variant report

Variant	rs930585
Chromosome Location	chr11:70687916-70687917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2921332	0.87[EUR][1000 genomes]
rs2921333	0.87[EUR][1000 genomes]
rs2921337	0.85[EUR][1000 genomes]
rs2921338	0.85[EUR][1000 genomes]
rs2921339	0.83[EUR][1000 genomes]
rs2921340	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2921341	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2921342	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2921343	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3017499	0.83[ASW][hapmap];0.84[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs3019838	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3019841	0.82[EUR][1000 genomes]
rs3019849	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs930585	RCE1	cis	parietal	SCAN
rs930585	TMEM134	cis	parietal	SCAN
rs930585	FAM168A	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70670000-70731800	Weak transcription	Gastric	stomach
2	chr11:70673000-70688800	Weak transcription	Pancreas	Pancrea
3	chr11:70681800-70701400	Weak transcription	Liver	Liver
4	chr11:70682400-70689800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:70682400-70690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:70684800-70697000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:70685200-70691600	Weak transcription	Fetal Brain Female	brain
8	chr11:70686000-70690200	Strong transcription	Fetal Intestine Small	intestine
9	chr11:70686400-70690800	Weak transcription	Right Atrium	heart
10	chr11:70687400-70689000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:70687600-70688200	Strong transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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