Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10000494	0.82[ASN][1000 genomes]
rs10006152	0.82[ASN][1000 genomes]
rs10006801	0.81[ASN][1000 genomes]
rs11099257	0.84[ASN][1000 genomes]
rs12642121	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12643174	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1497206	0.82[ASN][1000 genomes]
rs1497207	0.82[ASN][1000 genomes]
rs1506592	0.81[ASN][1000 genomes]
rs1506593	0.82[ASN][1000 genomes]
rs2132800	0.90[ASN][1000 genomes]
rs28505529	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28535881	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28654917	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28682501	0.82[ASN][1000 genomes]
rs4859944	0.84[ASN][1000 genomes]
rs55950539	0.82[ASN][1000 genomes]
rs6814143	0.83[ASN][1000 genomes]
rs6848890	0.81[ASN][1000 genomes]
rs6850048	0.82[ASN][1000 genomes]
rs6851300	0.81[ASN][1000 genomes]
rs6858597	0.82[ASN][1000 genomes]
rs7656435	0.81[ASN][1000 genomes]
rs7670647	0.80[ASN][1000 genomes]
rs7677215	0.81[ASN][1000 genomes]
rs7681167	0.81[ASN][1000 genomes]
rs7685095	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7689597	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879492	chr4:76088845-76154064	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76105000-76105600	Active TSS	Rectal Mucosa Donor 31	rectum

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