Variant report
Variant | rs2132800 |
---|---|
Chromosome Location | chr4:76116512-76116513 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | FOS | chr4:76116266-76116559 | MCF10A-Er-Src | breast: | n/a | chr4:76116446-76116458 chr4:76116447-76116457 chr4:76116448-76116457 chr4:76116447-76116457 chr4:76116447-76116456 chr4:76116449-76116456 |
2 | FOS | chr4:76116298-76116569 | MCF10A-Er-Src | breast: | n/a | chr4:76116446-76116458 chr4:76116447-76116457 chr4:76116448-76116457 chr4:76116447-76116457 chr4:76116447-76116456 chr4:76116449-76116456 |
3 | FOS | chr4:76116320-76116586 | MCF10A-Er-Src | breast: | n/a | chr4:76116446-76116458 chr4:76116447-76116457 chr4:76116448-76116457 chr4:76116447-76116457 chr4:76116447-76116456 chr4:76116449-76116456 |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:76115478..76117516-chr4:76118088..76119671,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000250560 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10000494 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs10006152 | 0.90[ASN][1000 genomes] |
rs10006801 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10033452 | 0.83[ASN][1000 genomes] |
rs11722701 | 0.87[ASN][1000 genomes] |
rs11725912 | 0.87[ASN][1000 genomes] |
rs12642121 | 0.80[ASN][1000 genomes] |
rs13102259 | 0.87[ASN][1000 genomes] |
rs1497205 | 0.87[ASN][1000 genomes] |
rs1497206 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs1497207 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs1497226 | 0.86[ASN][1000 genomes] |
rs1506592 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1506593 | 0.90[ASN][1000 genomes] |
rs1874585 | 0.87[ASN][1000 genomes] |
rs2132804 | 0.87[ASN][1000 genomes] |
rs2132806 | 0.86[ASN][1000 genomes] |
rs28535881 | 0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs28654917 | 0.80[ASN][1000 genomes] |
rs28682501 | 0.90[ASN][1000 genomes] |
rs55950539 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs6535241 | 0.86[ASN][1000 genomes] |
rs6814143 | 0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs6848890 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6850048 | 0.90[ASN][1000 genomes] |
rs6851300 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6854668 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6857874 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6858597 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs7656435 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7658434 | 0.87[ASN][1000 genomes] |
rs7670647 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7673324 | 0.87[ASN][1000 genomes] |
rs7676316 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7677215 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7681167 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7685095 | 0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7689597 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7691721 | 0.87[ASN][1000 genomes] |
rs9307717 | 0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1005324 | chr4:75689880-76233555 | Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv537142 | chr4:75689880-76233555 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv1010552 | chr4:76064415-76325430 | Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | esv1850883 | chr4:76065572-76194403 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv879492 | chr4:76088845-76154064 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv526880 | chr4:76111366-76134763 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:76116400-76116600 | Enhancers | Aorta | Aorta |