Variant report
Variant | rs7658434 |
---|---|
Chromosome Location | chr4:76159032-76159033 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:76157900..76160186-chr4:76160189..76163164,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10000494 | 0.95[ASN][1000 genomes] |
rs10006152 | 0.95[ASN][1000 genomes] |
rs10006801 | 0.96[ASN][1000 genomes] |
rs10021538 | 0.80[ASN][1000 genomes] |
rs10033452 | 0.88[ASN][1000 genomes] |
rs11099467 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11099468 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11722701 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11725912 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13102259 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13102557 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1497205 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1497206 | 0.95[ASN][1000 genomes] |
rs1497207 | 0.95[ASN][1000 genomes] |
rs1497226 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1506592 | 0.96[ASN][1000 genomes] |
rs1506593 | 0.95[ASN][1000 genomes] |
rs1874585 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2132800 | 0.87[ASN][1000 genomes] |
rs2132804 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2132806 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs28682501 | 0.95[ASN][1000 genomes] |
rs55950539 | 0.95[ASN][1000 genomes] |
rs6535241 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6811197 | 0.82[ASN][1000 genomes] |
rs6814143 | 0.92[ASN][1000 genomes] |
rs6848890 | 0.96[ASN][1000 genomes] |
rs6850048 | 0.95[ASN][1000 genomes] |
rs6851300 | 0.96[ASN][1000 genomes] |
rs6854668 | 0.87[ASN][1000 genomes] |
rs6857874 | 0.89[ASN][1000 genomes] |
rs6858597 | 0.95[ASN][1000 genomes] |
rs7656435 | 0.96[ASN][1000 genomes] |
rs7670647 | 0.95[ASN][1000 genomes] |
rs7673324 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7676316 | 0.90[ASN][1000 genomes] |
rs7677215 | 0.96[ASN][1000 genomes] |
rs7681167 | 0.96[ASN][1000 genomes] |
rs7689597 | 0.95[ASN][1000 genomes] |
rs7691721 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1005324 | chr4:75689880-76233555 | Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv537142 | chr4:75689880-76233555 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv1010552 | chr4:76064415-76325430 | Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | esv1850883 | chr4:76065572-76194403 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv594686 | chr4:76139891-76212995 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv968038 | chr4:76153468-76175173 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv594687 | chr4:76154064-76502748 | Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:76155800-76160200 | Weak transcription | GM12878-XiMat | blood |
2 | chr4:76156200-76160600 | Weak transcription | Fetal Intestine Large | intestine |
3 | chr4:76157600-76159800 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
4 | chr4:76158600-76164400 | Weak transcription | Colon Smooth Muscle | Colon |