Variant report

Variant	rs11099467
Chromosome Location	chr4:76178270-76178271
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76178186..76180045-chr4:76183353..76185602,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10006801	0.80[ASN][1000 genomes]
rs10021538	0.96[ASN][1000 genomes]
rs11099468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099470	0.95[ASN][1000 genomes]
rs11722701	0.84[ASN][1000 genomes]
rs11725912	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12648574	0.94[ASN][1000 genomes]
rs13102259	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13102557	0.81[EUR][1000 genomes]
rs1497205	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1497226	0.83[ASN][1000 genomes]
rs1506592	0.80[ASN][1000 genomes]
rs1845987	0.93[ASN][1000 genomes]
rs1874585	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2131690	0.95[ASN][1000 genomes]
rs2132804	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2132806	0.83[ASN][1000 genomes]
rs2172591	0.95[ASN][1000 genomes]
rs2867288	0.95[ASN][1000 genomes]
rs28792753	0.94[ASN][1000 genomes]
rs28886695	0.94[ASN][1000 genomes]
rs6535241	0.83[ASN][1000 genomes]
rs6848890	0.80[ASN][1000 genomes]
rs6851300	0.80[ASN][1000 genomes]
rs7656435	0.80[ASN][1000 genomes]
rs7658434	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7673324	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7677215	0.80[ASN][1000 genomes]
rs7681167	0.80[ASN][1000 genomes]
rs7691721	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv594686	chr4:76139891-76212995	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76174000-76185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:76174800-76185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:76175400-76180400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:76176800-76182400	Weak transcription	Rectal Mucosa Donor 31	rectum

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