Variant report

Variant	rs6535241
Chromosome Location	chr4:76175288-76175289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10000494	0.96[ASN][1000 genomes]
rs10006152	0.96[ASN][1000 genomes]
rs10006801	0.95[ASN][1000 genomes]
rs10033452	0.89[ASN][1000 genomes]
rs11099467	0.83[ASN][1000 genomes]
rs11099468	0.83[ASN][1000 genomes]
rs11722701	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11725912	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13102259	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13102557	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1497205	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1497206	0.96[ASN][1000 genomes]
rs1497207	0.96[ASN][1000 genomes]
rs1497226	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1506592	0.95[ASN][1000 genomes]
rs1506593	0.96[ASN][1000 genomes]
rs1874585	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2132800	0.86[ASN][1000 genomes]
rs2132804	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2132806	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682501	0.96[ASN][1000 genomes]
rs55950539	0.96[ASN][1000 genomes]
rs6811197	0.81[ASN][1000 genomes]
rs6814143	0.93[ASN][1000 genomes]
rs6848890	0.95[ASN][1000 genomes]
rs6850048	0.96[ASN][1000 genomes]
rs6851300	0.95[ASN][1000 genomes]
rs6854668	0.86[ASN][1000 genomes]
rs6857874	0.88[ASN][1000 genomes]
rs6858597	0.96[ASN][1000 genomes]
rs7656435	0.95[ASN][1000 genomes]
rs7658434	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7670647	0.94[ASN][1000 genomes]
rs7673324	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7676316	0.89[ASN][1000 genomes]
rs7677215	0.95[ASN][1000 genomes]
rs7681167	0.95[ASN][1000 genomes]
rs7689597	0.94[ASN][1000 genomes]
rs7691721	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv594686	chr4:76139891-76212995	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76173000-76175400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:76173000-76175400	Enhancers	HUVEC	blood vessel
3	chr4:76173800-76175400	Enhancers	Fetal Intestine Large	intestine
4	chr4:76174000-76185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:76174200-76177600	Enhancers	Colon Smooth Muscle	Colon
6	chr4:76174800-76175400	Enhancers	Hela-S3	cervix
7	chr4:76174800-76176000	Enhancers	Colonic Mucosa	Colon
8	chr4:76174800-76176000	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr4:76174800-76176200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr4:76174800-76177000	Weak transcription	Fetal Intestine Small	intestine
11	chr4:76174800-76185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:76175200-76175400	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links