Variant report

Variant	rs9309987
Chromosome Location	chr3:85759271-85759272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12054025	1.00[JPT][hapmap]
rs12630975	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12638299	0.83[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs17023242	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28391759	1.00[ASN][1000 genomes]
rs4603964	1.00[JPT][hapmap]
rs6781999	0.88[YRI][hapmap]
rs8179923	1.00[JPT][hapmap]
rs9835483	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9839124	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9840195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9865467	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85758600-85759400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:85758600-85759400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:85758600-85759400	Enhancers	Brain Substantia Nigra	brain
4	chr3:85758600-85760000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:85758800-85759400	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:85759000-85759400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr3:85759000-85759400	Enhancers	Fetal Brain Female	brain
8	chr3:85759000-85760000	Enhancers	Fetal Brain Male	brain
9	chr3:85759000-85760200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:85759200-85760600	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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