Variant report

Variant	rs9311325
Chromosome Location	chr3:42605636-42605637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42604560..42606277-chr3:42641170..42643967,2	K562	blood:
2	chr3:42604086..42606277-chr3:42642467..42644274,2	K562	blood:

Variant related genes	Relation type
ENSG00000093183	Chromatin interaction
ENSG00000114857	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10154957	1.00[YRI][hapmap]
rs9844154	1.00[YRI][hapmap]
rs9847303	1.00[YRI][hapmap]
rs9849556	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9853946	1.00[YRI][hapmap]
rs9869844	1.00[AFR][1000 genomes]
rs9876937	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002944	chr3:42559762-42728909	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42587400-42606800	Weak transcription	Small Intestine	intestine
2	chr3:42587800-42611800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:42588000-42613000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:42588400-42613000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:42588600-42618000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:42589000-42611800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:42589200-42611000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:42589400-42610800	Weak transcription	Stomach Mucosa	stomach
9	chr3:42589400-42611000	Strong transcription	Fetal Stomach	stomach
10	chr3:42589400-42612400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:42589400-42614000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:42589600-42611200	Strong transcription	Fetal Intestine Small	intestine
13	chr3:42589600-42611800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr3:42589800-42610600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:42589800-42611000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:42589800-42616400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:42590000-42611600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr3:42590000-42612600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr3:42590200-42611600	Strong transcription	Fetal Muscle Leg	muscle
20	chr3:42590200-42611800	Strong transcription	Adipose Nuclei	Adipose
21	chr3:42591000-42609200	Strong transcription	Fetal Intestine Large	intestine
22	chr3:42591000-42614000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:42591200-42610400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:42591200-42611800	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:42591400-42611200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:42591600-42609400	Strong transcription	Primary B cells from cord blood	blood
27	chr3:42591600-42611800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:42591800-42609400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr3:42591800-42609400	Strong transcription	Fetal Lung	lung
30	chr3:42591800-42610600	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:42592000-42611800	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:42592800-42609200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:42592800-42609200	Strong transcription	Placenta	Placenta
34	chr3:42592800-42610600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:42593400-42611000	Strong transcription	Liver	Liver
36	chr3:42593400-42612000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr3:42593600-42611600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:42593800-42611600	Strong transcription	Fetal Brain Female	brain
39	chr3:42594400-42611600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr3:42594600-42615200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr3:42594800-42610800	Weak transcription	Fetal Heart	heart
42	chr3:42597600-42609000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr3:42598000-42611400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:42598000-42615600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr3:42598200-42611000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:42598200-42616400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:42598400-42606200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:42598400-42609000	Strong transcription	GM12878-XiMat	blood
49	chr3:42598400-42611800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:42598600-42611600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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