Variant report
| Variant | rs9844154 |
|---|---|
| Chromosome Location | chr3:42714019-42714020 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:42661746..42664078-chr3:42712950..42714516,2 | K562 | blood: | |
| 2 | chr3:42712017..42714331-chr3:42717093..42719495,2 | K562 | blood: | |
| 3 | chr3:42707503..42709270-chr3:42712561..42714862,2 | MCF-7 | breast: | |
| 4 | chr3:42713506..42715721-chr3:42783952..42785579,2 | K562 | blood: | |
| 5 | chr3:42703465..42708475-chr3:42709684..42714527,5 | MCF-7 | breast: | |
| 6 | chr3:42713022..42715006-chr3:42718791..42720637,2 | MCF-7 | breast: | |
| 7 | chr3:42693708..42695946-chr3:42712144..42715197,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000114857 | Chromatin interaction |
| ENSG00000114853 | Chromatin interaction |
| ENSG00000240203 | Chromatin interaction |
| ENSG00000230084 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10154957 | 0.81[AFR][1000 genomes] |
| rs13320629 | 1.00[YRI][hapmap] |
| rs13325536 | 0.81[AFR][1000 genomes] |
| rs28830825 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58273990 | 0.81[AFR][1000 genomes] |
| rs9311325 | 1.00[YRI][hapmap] |
| rs9811031 | 1.00[YRI][hapmap] |
| rs9811777 | 1.00[YRI][hapmap] |
| rs9816776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9822273 | 0.81[AFR][1000 genomes] |
| rs9847303 | 1.00[YRI][hapmap] |
| rs9849556 | 1.00[YRI][hapmap] |
| rs9853946 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs9876937 | 1.00[YRI][hapmap] |
| rs9985361 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002944 | chr3:42559762-42728909 | Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:42710000-42715200 | Weak transcription | Fetal Heart | heart |
