Variant report
| Variant | rs28830825 |
|---|---|
| Chromosome Location | chr3:42717921-42717922 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CCDC13-1 | chr3:42716784-42722741 | XLOC_003100 |
| 2 | lnc-CCDC13-1 | chr3:42717684-42717983 | NONHSAT089252 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10154957 | 0.81[AFR][1000 genomes] |
| rs13325536 | 0.81[AFR][1000 genomes] |
| rs58273990 | 0.81[AFR][1000 genomes] |
| rs9816776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9822273 | 0.81[AFR][1000 genomes] |
| rs9844154 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9853946 | 0.81[AFR][1000 genomes] |
| rs9985361 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002944 | chr3:42559762-42728909 | Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
