Variant report

Variant	rs9311505
Chromosome Location	chr3:53589893-53589894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1003556	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1003557	1.00[ASN][1000 genomes]
rs17053156	0.82[CHB][hapmap]
rs17053162	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6445585	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6445587	1.00[ASN][1000 genomes]
rs7642214	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53579000-53592000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:53584800-53592600	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:53586200-53600800	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53587600-53605000	Weak transcription	Pancreas	Pancrea
5	chr3:53589200-53590400	Flanking Active TSS	GM12878-XiMat	blood
6	chr3:53589600-53590000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:53589800-53590200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:53589800-53592400	Weak transcription	Fetal Lung	lung
9	chr3:53589800-53593600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:53589800-53600800	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links