Variant report

Variant	rs6445585
Chromosome Location	chr3:53588759-53588760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1003556	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1003557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17053141	1.00[EUR][1000 genomes]
rs17053156	0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs17053162	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17053169	1.00[EUR][1000 genomes]
rs56968152	1.00[EUR][1000 genomes]
rs60396765	1.00[EUR][1000 genomes]
rs6445584	0.87[ASW][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs6445587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311505	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9829098	0.87[ASW][hapmap];0.87[YRI][hapmap]
rs9880731	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53579000-53592000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:53580000-53589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:53584800-53592600	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:53586200-53600800	Weak transcription	Fetal Intestine Large	intestine
5	chr3:53586600-53589800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:53587600-53588800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:53587600-53589400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:53587600-53605000	Weak transcription	Pancreas	Pancrea
9	chr3:53587800-53589600	Weak transcription	Fetal Intestine Small	intestine
10	chr3:53588200-53589200	Enhancers	Fetal Lung	lung
11	chr3:53588400-53588800	Flanking Active TSS	GM12878-XiMat	blood
12	chr3:53588400-53589800	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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