Variant report

Variant	rs6445584
Chromosome Location	chr3:53587844-53587845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28713456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3821857	1.00[MEX][hapmap]
rs6445585	0.87[ASW][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs6445586	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9829098	1.00[ASW][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880731	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53579000-53592000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:53580000-53589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:53584800-53592600	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:53586200-53600800	Weak transcription	Fetal Intestine Large	intestine
5	chr3:53586600-53589800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:53587600-53588400	Enhancers	GM12878-XiMat	blood
7	chr3:53587600-53588800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:53587600-53589400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:53587600-53605000	Weak transcription	Pancreas	Pancrea
10	chr3:53587800-53588200	Weak transcription	Fetal Lung	lung
11	chr3:53587800-53589600	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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