Variant report

Variant	rs6445586
Chromosome Location	chr3:53592992-53592993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28713456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6445584	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9829098	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880731	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53586200-53600800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:53587600-53605000	Weak transcription	Pancreas	Pancrea
3	chr3:53589800-53593600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:53589800-53600800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:53590000-53593400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:53592000-53594000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
7	chr3:53592400-53593200	Strong transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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