Variant report

Variant	rs9829098
Chromosome Location	chr3:53598512-53598513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28713456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3774461	1.00[CHB][hapmap]
rs6445584	1.00[ASW][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6445585	0.87[ASW][hapmap];0.87[YRI][hapmap]
rs6445586	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs709321	1.00[CHB][hapmap]
rs9880731	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53586200-53600800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:53587600-53605000	Weak transcription	Pancreas	Pancrea
3	chr3:53589800-53600800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:53593800-53599200	Weak transcription	Fetal Lung	lung
5	chr3:53593800-53600400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:53594000-53598600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:53595800-53601600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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