Variant report

Variant	rs17053169
Chromosome Location	chr3:53584497-53584498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53577328..53580007-chr3:53582847..53586220,5	MCF-7	breast:
2	chr3:53583822..53587338-chr3:53599024..53602468,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1003556	1.00[EUR][1000 genomes]
rs1003557	1.00[EUR][1000 genomes]
rs1356657	1.00[JPT][hapmap]
rs17053141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17053156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17053162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56968152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60396765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6445585	1.00[EUR][1000 genomes]
rs6445587	1.00[EUR][1000 genomes]
rs7642214	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53560600-53587000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53579000-53592000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:53580000-53589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:53580400-53587400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:53581400-53587200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:53582800-53585200	Weak transcription	Fetal Intestine Large	intestine
7	chr3:53583000-53585800	Weak transcription	Gastric	stomach
8	chr3:53583400-53586200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:53584000-53584600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:53584000-53584600	Enhancers	Brain Substantia Nigra	brain
11	chr3:53584000-53584600	Enhancers	Lung	lung
12	chr3:53584000-53584800	Enhancers	Colon Smooth Muscle	Colon
13	chr3:53584000-53585600	Strong transcription	Fetal Intestine Small	intestine
14	chr3:53584000-53586400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:53584200-53584600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:53584200-53584600	Enhancers	Esophagus	oesophagus
17	chr3:53584200-53584600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr3:53584200-53584800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:53584200-53584800	Enhancers	Brain Anterior Caudate	brain
20	chr3:53584400-53584600	Strong transcription	Fetal Lung	lung
21	chr3:53584400-53584600	Enhancers	Stomach Smooth Muscle	stomach
22	chr3:53584400-53585600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr3:53584400-53587200	Weak transcription	Pancreas	Pancrea

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