Variant report

Variant	rs17053141
Chromosome Location	chr3:53560922-53560923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1003556	1.00[EUR][1000 genomes]
rs1003557	1.00[EUR][1000 genomes]
rs17053156	0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17053162	0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17053169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2109182	0.94[GIH][hapmap]
rs3774427	0.97[GIH][hapmap]
rs56968152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60396765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6445585	1.00[EUR][1000 genomes]
rs6445587	1.00[EUR][1000 genomes]
rs7642214	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53552400-53568400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:53553400-53562800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:53559200-53563800	Weak transcription	Aorta	Aorta
4	chr3:53559400-53561000	Enhancers	Colon Smooth Muscle	Colon
5	chr3:53560000-53561600	Genic enhancers	Fetal Lung	lung
6	chr3:53560400-53564600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:53560400-53565800	Weak transcription	Right Atrium	heart
8	chr3:53560400-53566800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:53560400-53568400	Weak transcription	Pancreas	Pancrea
10	chr3:53560600-53561000	Enhancers	Fetal Intestine Small	intestine
11	chr3:53560600-53587000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:53560800-53561000	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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