Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53565593..53566409-chr3:53702634..53703149,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1002578	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10440150	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs13323471	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17053141	0.97[GIH][hapmap]
rs17053233	1.00[TSI][hapmap]
rs17053265	1.00[TSI][hapmap]
rs17053279	1.00[TSI][hapmap]
rs2109182	0.90[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs28620592	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs3774429	1.00[TSI][hapmap]
rs3774430	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs3774431	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs3774442	1.00[TSI][hapmap]
rs3774443	1.00[TSI][hapmap]
rs3774447	1.00[TSI][hapmap]
rs9311503	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9311504	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9821489	1.00[TSI][hapmap]
rs9865394	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs9882823	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53552400-53568400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:53560400-53565800	Weak transcription	Right Atrium	heart
3	chr3:53560400-53566800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:53560400-53568400	Weak transcription	Pancreas	Pancrea
5	chr3:53560600-53587000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:53561000-53565800	Weak transcription	Fetal Intestine Large	intestine
7	chr3:53561000-53568800	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:53561600-53565800	Weak transcription	Fetal Lung	lung
9	chr3:53563600-53565800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:53563600-53566000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:53563600-53569400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:53564800-53568600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:53564800-53579400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:53565400-53566600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:53565600-53566400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:53565600-53566400	Enhancers	Fetal Intestine Small	intestine

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