Variant report

Variant	rs3774447
Chromosome Location	chr3:53595712-53595713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53591145..53593317-chr3:53594107..53596657,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1002578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10440150	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1123895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13323471	0.85[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs17053146	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs17053233	1.00[TSI][hapmap]
rs17053265	1.00[TSI][hapmap]
rs17053279	1.00[TSI][hapmap]
rs2109182	1.00[TSI][hapmap]
rs28620592	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3774427	1.00[TSI][hapmap]
rs3774429	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs3774430	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs3774431	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3774442	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3774443	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3821845	0.93[ASN][1000 genomes]
rs9311503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9311504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9821489	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9865394	0.93[ASN][1000 genomes]
rs9882823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53586200-53600800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:53587600-53605000	Weak transcription	Pancreas	Pancrea
3	chr3:53589800-53600800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:53593600-53595800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:53593800-53599200	Weak transcription	Fetal Lung	lung
6	chr3:53593800-53600400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:53594000-53598600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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