Variant report

Variant	rs17053146
Chromosome Location	chr3:53561796-53561797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1002578	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs10440150	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123895	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13323471	0.85[CHB][hapmap];0.95[ASN][1000 genomes]
rs28620592	0.95[ASN][1000 genomes]
rs3774429	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774430	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3774431	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs3774442	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs3774443	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs3774447	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs3821845	0.95[ASN][1000 genomes]
rs9311503	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9311504	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs979220	0.89[JPT][hapmap]
rs9821489	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs9865394	0.95[ASN][1000 genomes]
rs9882823	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53552400-53568400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:53553400-53562800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:53559200-53563800	Weak transcription	Aorta	Aorta
4	chr3:53560400-53564600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:53560400-53565800	Weak transcription	Right Atrium	heart
6	chr3:53560400-53566800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:53560400-53568400	Weak transcription	Pancreas	Pancrea
8	chr3:53560600-53587000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:53561000-53565600	Weak transcription	Fetal Intestine Small	intestine
10	chr3:53561000-53565800	Weak transcription	Fetal Intestine Large	intestine
11	chr3:53561000-53568800	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:53561600-53565800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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