Variant report

Variant	rs9821489
Chromosome Location	chr3:53575728-53575729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1002578	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10440150	0.85[CHB][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs1123895	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13323471	0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs17053146	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs17053233	1.00[TSI][hapmap]
rs17053265	1.00[TSI][hapmap]
rs17053279	1.00[TSI][hapmap]
rs2109182	1.00[TSI][hapmap]
rs28620592	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774427	1.00[TSI][hapmap]
rs3774429	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.98[ASN][1000 genomes]
rs3774430	0.85[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs3774431	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3774442	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774443	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3774447	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3821845	0.98[ASN][1000 genomes]
rs9311503	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9311504	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9865394	0.98[ASN][1000 genomes]
rs9882823	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53560600-53587000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53564800-53579400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:53566400-53583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:53567800-53579400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:53569400-53581800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:53569600-53581800	Weak transcription	Fetal Intestine Large	intestine
7	chr3:53570600-53579200	Weak transcription	Fetal Lung	lung
8	chr3:53571000-53577600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:53575600-53578400	Weak transcription	Fetal Intestine Small	intestine

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