Variant report

Variant	rs17053265
Chromosome Location	chr3:53646539-53646540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17053209	1.00[EUR][1000 genomes]
rs17053233	1.00[TSI][hapmap]
rs17053279	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17053283	1.00[EUR][1000 genomes]
rs2109182	1.00[TSI][hapmap]
rs2612019	1.00[EUR][1000 genomes]
rs3774427	1.00[TSI][hapmap]
rs3774429	1.00[TSI][hapmap]
rs3774442	1.00[TSI][hapmap]
rs3774443	1.00[TSI][hapmap]
rs3774447	1.00[TSI][hapmap]
rs60549042	1.00[EUR][1000 genomes]
rs6762018	1.00[EUR][1000 genomes]
rs6802195	1.00[EUR][1000 genomes]
rs72966323	1.00[EUR][1000 genomes]
rs72966328	1.00[EUR][1000 genomes]
rs7646314	1.00[EUR][1000 genomes]
rs9821489	1.00[TSI][hapmap]
rs9846874	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53635400-53650200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:53639400-53650200	Weak transcription	Fetal Intestine Small	intestine
3	chr3:53640000-53650800	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53641200-53650000	Weak transcription	Fetal Lung	lung
5	chr3:53645400-53651000	Weak transcription	Lung	lung
6	chr3:53646200-53646600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:53646200-53649200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:53646400-53647200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:53646400-53647600	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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