Variant report

Variant	rs9315649
Chromosome Location	chr13:39637099-39637100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39624114..39626066-chr13:39636709..39639010,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11840611	0.91[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs12430086	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1326404	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1887107	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1926474	0.91[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs1926475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324160	1.00[ASN][1000 genomes]
rs3751376	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs3865000	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs6563660	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6563661	0.91[CEU][hapmap];0.90[CHB][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.80[ASN][1000 genomes]
rs6563662	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs67948555	0.82[ASN][1000 genomes]
rs7324256	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7337269	0.81[ASN][1000 genomes]
rs7985641	0.91[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.81[ASN][1000 genomes]
rs7995325	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566395	1.00[ASN][1000 genomes]
rs9576672	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9576680	0.86[ASN][1000 genomes]
rs9576720	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576723	1.00[ASN][1000 genomes]
rs9594319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603500	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888511	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39613200-39637200	Weak transcription	Pancreas	Pancrea
2	chr13:39613200-39647000	Weak transcription	Left Ventricle	heart
3	chr13:39613200-39647200	Weak transcription	Lung	lung
4	chr13:39613400-39646600	Weak transcription	Aorta	Aorta
5	chr13:39613800-39639200	Weak transcription	Fetal Stomach	stomach
6	chr13:39614400-39644000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:39615000-39638200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:39615200-39637600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr13:39618600-39643800	Weak transcription	Ovary	ovary
10	chr13:39620000-39644200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:39622600-39643000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr13:39622800-39639000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr13:39624000-39644400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr13:39627800-39640800	Weak transcription	Adipose Nuclei	Adipose
15	chr13:39627800-39641000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:39628000-39637600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr13:39628000-39640600	Weak transcription	Primary T cells from cord blood	blood
18	chr13:39628000-39644000	Weak transcription	Dnd41	blood
19	chr13:39628000-39645400	Weak transcription	Primary B cells from cord blood	blood
20	chr13:39628000-39645800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr13:39628200-39643600	Weak transcription	Liver	Liver
22	chr13:39628200-39646800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr13:39628400-39645000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr13:39635000-39644200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr13:39635200-39639000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr13:39635400-39640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr13:39635600-39637400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr13:39635800-39646600	Weak transcription	Fetal Muscle Leg	muscle
29	chr13:39636200-39637200	Strong transcription	Fetal Intestine Small	intestine
30	chr13:39636200-39637200	Strong transcription	Spleen	Spleen
31	chr13:39636400-39637200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr13:39636800-39639000	Weak transcription	Fetal Intestine Large	intestine
33	chr13:39636800-39640200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr13:39636800-39645600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr13:39637000-39639400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr13:39637000-39642000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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