Variant report

Variant	rs9566395
Chromosome Location	chr13:39657360-39657361
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11840611	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs12430086	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1326404	0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs1409442	0.82[EUR][1000 genomes]
rs1536342	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1853970	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1887107	0.98[ASN][1000 genomes]
rs1887111	0.89[EUR][1000 genomes]
rs1926474	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1926475	1.00[ASN][1000 genomes]
rs2094251	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2148418	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2324160	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751376	0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs3865000	0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs6563660	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6563661	0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6563662	0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs67948555	0.82[ASN][1000 genomes]
rs7320516	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7324256	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7337269	0.81[ASN][1000 genomes]
rs7489497	0.86[EUR][1000 genomes]
rs7985641	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs7995325	1.00[ASN][1000 genomes]
rs9315647	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9315649	1.00[ASN][1000 genomes]
rs9315650	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9576672	0.82[ASN][1000 genomes]
rs9576680	0.86[ASN][1000 genomes]
rs9576720	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9576723	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594319	1.00[ASN][1000 genomes]
rs9603500	1.00[ASN][1000 genomes]
rs9603503	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9888511	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39657000-39658000	Enhancers	Fetal Intestine Large	intestine

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