Variant report

Variant	rs1536342
Chromosome Location	chr13:39637373-39637374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39624114..39626066-chr13:39636709..39639010,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1078421	0.85[ASN][1000 genomes]
rs12430086	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs1326404	0.89[CEU][hapmap];0.93[GIH][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs1409442	0.89[EUR][1000 genomes]
rs1853970	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926471	0.95[ASN][1000 genomes]
rs2094250	0.88[AFR][1000 genomes]
rs2094251	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2148418	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324125	0.89[ASN][1000 genomes]
rs2324160	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3751376	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs3865000	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs55713408	0.81[ASN][1000 genomes]
rs6563660	0.89[CEU][hapmap]
rs71215982	0.80[ASN][1000 genomes]
rs7320516	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324256	0.93[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs7324837	0.84[EUR][1000 genomes]
rs7489497	0.93[EUR][1000 genomes]
rs9315647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315650	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9532325	0.81[ASN][1000 genomes]
rs9548594	0.95[ASN][1000 genomes]
rs9548610	0.94[ASN][1000 genomes]
rs9548612	0.90[ASN][1000 genomes]
rs9566395	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9576680	0.81[EUR][1000 genomes]
rs9576723	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9603503	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9888511	0.89[CEU][hapmap];0.93[GIH][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39613200-39647000	Weak transcription	Left Ventricle	heart
2	chr13:39613200-39647200	Weak transcription	Lung	lung
3	chr13:39613400-39646600	Weak transcription	Aorta	Aorta
4	chr13:39613800-39639200	Weak transcription	Fetal Stomach	stomach
5	chr13:39614400-39644000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:39615000-39638200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:39615200-39637600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr13:39618600-39643800	Weak transcription	Ovary	ovary
9	chr13:39620000-39644200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:39622600-39643000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr13:39622800-39639000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr13:39624000-39644400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr13:39627800-39640800	Weak transcription	Adipose Nuclei	Adipose
14	chr13:39627800-39641000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr13:39628000-39637600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:39628000-39640600	Weak transcription	Primary T cells from cord blood	blood
17	chr13:39628000-39644000	Weak transcription	Dnd41	blood
18	chr13:39628000-39645400	Weak transcription	Primary B cells from cord blood	blood
19	chr13:39628000-39645800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr13:39628200-39643600	Weak transcription	Liver	Liver
21	chr13:39628200-39646800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr13:39628400-39645000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:39635000-39644200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr13:39635200-39639000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr13:39635400-39640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr13:39635600-39637400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr13:39635800-39646600	Weak transcription	Fetal Muscle Leg	muscle
28	chr13:39636800-39639000	Weak transcription	Fetal Intestine Large	intestine
29	chr13:39636800-39640200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr13:39636800-39645600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr13:39637000-39639400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr13:39637000-39642000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr13:39637200-39637400	Enhancers	Pancreas	Pancrea
34	chr13:39637200-39638800	Weak transcription	Spleen	Spleen
35	chr13:39637200-39642400	Weak transcription	Fetal Intestine Small	intestine
36	chr13:39637200-39647800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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