Variant report

Variant	rs2324125
Chromosome Location	chr13:39678348-39678349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10162229	0.81[ASN][1000 genomes]
rs1078421	0.94[ASN][1000 genomes]
rs1359653	0.84[ASN][1000 genomes]
rs1359654	0.84[ASN][1000 genomes]
rs1536342	0.89[ASN][1000 genomes]
rs1853970	0.89[ASN][1000 genomes]
rs1887108	0.84[ASN][1000 genomes]
rs1887109	0.84[ASN][1000 genomes]
rs1887111	0.83[ASN][1000 genomes]
rs1926471	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2148418	0.89[ASN][1000 genomes]
rs2324129	0.86[ASN][1000 genomes]
rs2324130	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4270047	0.85[ASN][1000 genomes]
rs4941905	0.84[ASN][1000 genomes]
rs4943628	0.87[ASN][1000 genomes]
rs4943629	0.87[ASN][1000 genomes]
rs4943631	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4943632	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs55713408	0.89[ASN][1000 genomes]
rs71215982	0.87[ASN][1000 genomes]
rs7320516	0.89[ASN][1000 genomes]
rs7990542	0.86[ASN][1000 genomes]
rs9315647	0.89[ASN][1000 genomes]
rs9315650	0.88[ASN][1000 genomes]
rs9315652	0.86[ASN][1000 genomes]
rs9315653	0.86[ASN][1000 genomes]
rs9315654	0.84[ASN][1000 genomes]
rs9532325	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9548594	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548610	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9548612	0.99[ASN][1000 genomes]
rs9548614	0.84[ASN][1000 genomes]
rs9548615	0.84[ASN][1000 genomes]
rs9548616	0.84[ASN][1000 genomes]
rs9548618	0.84[ASN][1000 genomes]
rs9548619	0.84[ASN][1000 genomes]
rs9548620	0.84[ASN][1000 genomes]
rs9548636	0.84[ASN][1000 genomes]
rs9576729	0.81[ASN][1000 genomes]
rs9603503	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39675800-39679600	Weak transcription	HSMMtube	muscle
2	chr13:39676000-39680800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:39677000-39678400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:39677000-39678600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:39677000-39678600	Enhancers	Brain Hippocampus Middle	brain
6	chr13:39677000-39678800	Enhancers	Brain Substantia Nigra	brain
7	chr13:39677200-39678800	Enhancers	Fetal Muscle Leg	muscle
8	chr13:39677400-39678600	Enhancers	Brain Angular Gyrus	brain
9	chr13:39677800-39678800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr13:39677800-39679400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:39677800-39679400	Weak transcription	Fetal Brain Male	brain
12	chr13:39678000-39679600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:39678000-39681800	Weak transcription	Brain Anterior Caudate	brain
14	chr13:39678000-39682600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:39678200-39680200	Weak transcription	Fetal Brain Female	brain

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