Variant report

Variant	rs4943631
Chromosome Location	chr13:39681128-39681129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10162229	0.94[ASN][1000 genomes]
rs1078421	0.92[ASN][1000 genomes]
rs1333437	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1359653	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1359654	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1887108	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1887109	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1926471	0.82[ASN][1000 genomes]
rs2324125	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2324129	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2324130	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4270047	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4941905	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4943628	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943629	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943639	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55713408	0.81[ASN][1000 genomes]
rs6563683	0.83[AMR][1000 genomes]
rs67298163	0.92[ASN][1000 genomes]
rs726051	0.88[AMR][1000 genomes]
rs7990542	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9315652	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9315653	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9315654	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548594	0.82[ASN][1000 genomes]
rs9548610	0.85[ASN][1000 genomes]
rs9548612	0.88[ASN][1000 genomes]
rs9548614	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548615	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548616	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548618	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548619	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548620	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548636	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548637	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9548639	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9548643	0.83[AMR][1000 genomes]
rs9576729	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39678000-39681800	Weak transcription	Brain Anterior Caudate	brain
2	chr13:39678000-39682600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:39679200-39683400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr13:39679200-39683400	Enhancers	Fetal Muscle Leg	muscle
5	chr13:39679400-39683800	Enhancers	Fetal Brain Male	brain
6	chr13:39679600-39683400	Enhancers	Brain Cingulate Gyrus	brain
7	chr13:39679600-39683600	Enhancers	HSMMtube	muscle
8	chr13:39680000-39682400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:39680000-39688400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr13:39680200-39683600	Enhancers	Fetal Brain Female	brain
11	chr13:39680600-39682600	Weak transcription	Brain Angular Gyrus	brain
12	chr13:39680600-39683000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:39680800-39681200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:39680800-39682000	Enhancers	Brain Germinal Matrix	brain
15	chr13:39680800-39683000	Weak transcription	Brain Substantia Nigra	brain
16	chr13:39680800-39683400	Enhancers	Brain Hippocampus Middle	brain

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