Variant report
| Variant | rs67298163 |
|---|---|
| Chromosome Location | chr13:39687949-39687950 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10162135 | 0.81[AMR][1000 genomes] |
| rs10162229 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10467464 | 0.83[AMR][1000 genomes] |
| rs1078421 | 0.84[ASN][1000 genomes] |
| rs10870730 | 0.83[AMR][1000 genomes] |
| rs1333435 | 0.92[AMR][1000 genomes] |
| rs1333436 | 0.92[AMR][1000 genomes] |
| rs1359653 | 0.95[ASN][1000 genomes] |
| rs1359654 | 0.95[ASN][1000 genomes] |
| rs1413042 | 0.83[AMR][1000 genomes] |
| rs1413043 | 0.83[AMR][1000 genomes] |
| rs1887108 | 0.96[ASN][1000 genomes] |
| rs1887109 | 0.95[ASN][1000 genomes] |
| rs2324129 | 0.93[ASN][1000 genomes] |
| rs2324130 | 0.93[ASN][1000 genomes] |
| rs4270047 | 0.94[ASN][1000 genomes] |
| rs4941905 | 0.95[ASN][1000 genomes] |
| rs4943628 | 0.92[ASN][1000 genomes] |
| rs4943629 | 0.92[ASN][1000 genomes] |
| rs4943631 | 0.92[ASN][1000 genomes] |
| rs4943632 | 0.92[ASN][1000 genomes] |
| rs71215982 | 0.81[ASN][1000 genomes] |
| rs7334550 | 0.83[AMR][1000 genomes] |
| rs7990542 | 0.93[ASN][1000 genomes] |
| rs9315652 | 0.93[ASN][1000 genomes] |
| rs9315653 | 0.93[ASN][1000 genomes] |
| rs9315654 | 0.95[ASN][1000 genomes] |
| rs9315655 | 0.83[AMR][1000 genomes] |
| rs9532332 | 0.92[AMR][1000 genomes] |
| rs9548612 | 0.81[ASN][1000 genomes] |
| rs9548614 | 0.95[ASN][1000 genomes] |
| rs9548615 | 0.95[ASN][1000 genomes] |
| rs9548616 | 0.95[ASN][1000 genomes] |
| rs9548618 | 0.95[ASN][1000 genomes] |
| rs9548619 | 0.95[ASN][1000 genomes] |
| rs9548620 | 0.95[ASN][1000 genomes] |
| rs9548636 | 0.95[ASN][1000 genomes] |
| rs9566403 | 0.81[AMR][1000 genomes] |
| rs9576729 | 0.98[ASN][1000 genomes] |
| rs9576732 | 0.83[AMR][1000 genomes] |
| rs9576733 | 0.83[AMR][1000 genomes] |
| rs9576735 | 0.83[AMR][1000 genomes] |
| rs9576740 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1035255 | chr13:39618302-39715336 | Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer | Chromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39680000-39688400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
