Variant report

Variant	rs1078421
Chromosome Location	chr13:39679678-39679679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10162229	0.86[ASN][1000 genomes]
rs1359653	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1359654	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1536342	0.85[ASN][1000 genomes]
rs1853970	0.85[ASN][1000 genomes]
rs1887108	0.88[ASN][1000 genomes]
rs1887109	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1887111	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs1926471	0.89[ASN][1000 genomes]
rs2094251	0.82[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs2148418	0.85[ASN][1000 genomes]
rs2324125	0.94[ASN][1000 genomes]
rs2324129	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2324130	0.91[ASN][1000 genomes]
rs4270047	0.90[ASN][1000 genomes]
rs4941905	0.89[ASN][1000 genomes]
rs4943628	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4943629	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4943631	0.92[ASN][1000 genomes]
rs4943632	0.92[ASN][1000 genomes]
rs55713408	0.87[ASN][1000 genomes]
rs67298163	0.84[ASN][1000 genomes]
rs71215982	0.86[ASN][1000 genomes]
rs7320516	0.85[ASN][1000 genomes]
rs7990542	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9315647	0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs9315650	0.85[ASN][1000 genomes]
rs9315652	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9315653	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9315654	0.89[ASN][1000 genomes]
rs9532325	0.86[ASN][1000 genomes]
rs9548594	0.89[ASN][1000 genomes]
rs9548610	0.91[ASN][1000 genomes]
rs9548612	0.95[ASN][1000 genomes]
rs9548614	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9548615	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9548616	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9548618	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9548619	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9548620	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9548636	0.89[ASN][1000 genomes]
rs9576729	0.86[ASN][1000 genomes]
rs9603503	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39676000-39680800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:39678000-39681800	Weak transcription	Brain Anterior Caudate	brain
3	chr13:39678000-39682600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:39678200-39680200	Weak transcription	Fetal Brain Female	brain
5	chr13:39678600-39680800	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:39679000-39680000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:39679200-39680000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:39679200-39680600	Enhancers	Brain Angular Gyrus	brain
9	chr13:39679200-39680800	Enhancers	Brain Substantia Nigra	brain
10	chr13:39679200-39683400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr13:39679200-39683400	Enhancers	Fetal Muscle Leg	muscle
12	chr13:39679400-39683800	Enhancers	Fetal Brain Male	brain
13	chr13:39679600-39679800	Enhancers	HSMM	muscle
14	chr13:39679600-39683400	Enhancers	Brain Cingulate Gyrus	brain
15	chr13:39679600-39683600	Enhancers	HSMMtube	muscle

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