Variant report

Variant	rs9548610
Chromosome Location	chr13:39675911-39675912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1078421	0.91[ASN][1000 genomes]
rs1326404	0.80[GIH][hapmap]
rs1359653	0.82[ASN][1000 genomes]
rs1359654	0.82[ASN][1000 genomes]
rs1536342	0.94[ASN][1000 genomes]
rs1853970	0.94[ASN][1000 genomes]
rs1887108	0.82[ASN][1000 genomes]
rs1887109	0.82[ASN][1000 genomes]
rs1887111	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1926471	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2094251	0.95[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2148418	0.94[ASN][1000 genomes]
rs2324125	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2324129	0.84[ASN][1000 genomes]
rs2324130	0.84[ASN][1000 genomes]
rs4270047	0.83[ASN][1000 genomes]
rs4941905	0.82[ASN][1000 genomes]
rs4943628	0.85[ASN][1000 genomes]
rs4943629	0.85[ASN][1000 genomes]
rs4943631	0.85[ASN][1000 genomes]
rs4943632	0.85[ASN][1000 genomes]
rs55713408	0.87[ASN][1000 genomes]
rs71215982	0.85[ASN][1000 genomes]
rs7320516	0.94[ASN][1000 genomes]
rs7990542	0.84[ASN][1000 genomes]
rs9315647	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9315650	0.93[ASN][1000 genomes]
rs9315652	0.84[ASN][1000 genomes]
rs9315653	0.84[ASN][1000 genomes]
rs9315654	0.82[ASN][1000 genomes]
rs9532325	0.87[ASN][1000 genomes]
rs9548594	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548612	0.96[ASN][1000 genomes]
rs9548614	0.82[ASN][1000 genomes]
rs9548615	0.82[ASN][1000 genomes]
rs9548616	0.82[ASN][1000 genomes]
rs9548618	0.82[ASN][1000 genomes]
rs9548619	0.82[ASN][1000 genomes]
rs9548620	0.82[ASN][1000 genomes]
rs9548636	0.82[ASN][1000 genomes]
rs9603503	0.92[ASN][1000 genomes]
rs9888511	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39669000-39677000	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:39673600-39677200	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:39674600-39677800	Enhancers	Fetal Brain Male	brain
4	chr13:39675200-39676000	Enhancers	HSMM	muscle
5	chr13:39675400-39676000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:39675400-39677000	Weak transcription	Brain Substantia Nigra	brain
7	chr13:39675600-39676200	Weak transcription	Fetal Brain Female	brain
8	chr13:39675800-39679600	Weak transcription	HSMMtube	muscle

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