Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1078421	0.85[ASN][1000 genomes]
rs1326404	0.85[EUR][1000 genomes]
rs1409442	0.83[EUR][1000 genomes]
rs1536342	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887111	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926471	0.95[ASN][1000 genomes]
rs2094250	0.84[AFR][1000 genomes]
rs2094251	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2148418	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324125	0.89[ASN][1000 genomes]
rs2324160	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3751376	0.81[EUR][1000 genomes]
rs3865000	0.87[EUR][1000 genomes]
rs55713408	0.81[ASN][1000 genomes]
rs71215982	0.80[ASN][1000 genomes]
rs7320516	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7489497	0.87[EUR][1000 genomes]
rs9315647	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315650	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9532325	0.81[ASN][1000 genomes]
rs9548594	0.95[ASN][1000 genomes]
rs9548610	0.94[ASN][1000 genomes]
rs9548612	0.90[ASN][1000 genomes]
rs9566395	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9576723	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9603503	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9888511	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39658400-39660600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: